Adding this to the data-updates file gets it running again:
-- P.U.M.P.S
appmod.blacklist['offshore-pump-0'] = true
appmod.blacklist['offshore-pump-1'] = true
appmod.blacklist['offshore-pump-2'] = true
appmod.blacklist['offshore-pump-3'] = true
appmod.blacklist['offshore-pump-4'] = true
appmod.blacklist['water-pumpjack-1'] = true
appmod.blacklist['water-pumpjack-2'] = true
appmod.blacklist['water-pumpjack-3'] = true
appmod.blacklist['water-pumpjack-4'] = true
appmod.blacklist['water-pumpjack-5'] = true
appmod.blacklist['seafloor-pump'] = true
appmod.blacklist['ground-water-pump'] = true