I see you added item replacement for recipes to replace the no longer used vanilla uranium items, but one thing it ends up missing is that nuclear weapons from other mods end up using HEU instead of WGU.
I've run some numbers, and it seems like 1 WGU is equivalent to 4 HEU. It should be possible to check if the recipe produces a weapon (or an ammo), and if so, divide\replace the HEU with WGU (rounded up, if course).
alternatively, round down, and keep the remainder as HEU.