I manually fixed it on my side, made the recipes/items only be available when both mods are available (including the new valve) and everything is working fine but I am only using Bob's Logistics and Bob's Mining so yeah, other mods might create some conflict that I am not aware.
I think ages ago, PCB's were the ones that were made manually and most of machines used PCB's instead of electronic circuits so... maybe that is why. Just wonder, if this really changed, how no one noticed it yet since it might prevent game progression (not sure if it does, maybe bob's adds other items that circumvent this issue)
And I feel for you.... it is a total nightmare, since you have hundreds of mods combinations plus Py constantly doing major changes....