Beams and reinforced plates neither produce scrap when crafting, nor contributes to scrap production when used in a recipe.
Affected recipes: Copper/bronze capped beam, iron/steel/chromed beam, bronze/iron/steel/chromed reinforced plates.
This is basically all beams except wooden beam, and all reinforced plates.
Heavy copper cable has the same problem.
For copper beam, it's most visible in steam derrick recipe:
(I'm still having the old default of producing 10% scrap, instead of current default of 5%)
8 steam pipe + 12 copper capped beam + 12 tin plate + 4 copper piston -> 1 steam derrick + 1 tin scrap
This recipe certainly has scrap enabled, but the copper capped beam doesn't show up in scraps.
For heavy copper cable, it's most visible on radar:
1 Large iron frame + 1 Iron core EM coil + 16 iron plate + 1 heavy copper cable -> 1 radar + 1.5 iron scrap
This seems to explain the heat exchanger / turbines / hull sections / solar assembly / empty high pressure canister missing scrap problem.
Centrifuge is currently fine, all 3 of its input materials produce scrap when crafting, so it shouldn't produce scrap. Fixing the beams & reinforced plates should fix the rest.
I wonder whether this is an oversight or a delibrate design choice.