Sorry for the delayed response on this.
All my mods are up to date (including LEP+ 1.10.1 and SE 0.6.130), and the Lighted Substation does not appear on the Upgrade Planner's selection list at all for me. The other lighted poles are there just fine, but the Lighted Substation itself is just not on the list, either as before or after. It's not a matter of it not defaulting that brings me here; I almost never trust the default upgrade planner. But I can't get the Lighted Substation involved in the process at all.
Screenshot of the picker, starting from a blank slot: https://drive.google.com/file/d/1Xnpr9XDh7vnrqenap0lA8gFvVkVC5boo/view?usp=sharing
And when the Substation is chosen as the upgrade-from item: https://drive.google.com/file/d/1Bb__7p-HWhBS94muFeNWxIMqv0mA2p1s/view?usp=sharing
For good measure, an updated factorio-current.log taken from the same session as those screenshots, just now, to be sure nothing relevant changed with mod updates over the past week (though I don't think any mods needed updating): https://drive.google.com/file/d/1apA9m8roXFw8w1FjC9DmPo8fHOaMEAUF/view?usp=sharing
Edit - found the problem mod: https://mods.factorio.com/mod/space-exploration-substation-replacement Will direct this towards that instead.