How can I configure values for what yield infinite resources are set to?

Configure the mod settings by going to Settings -> Mod settings -> Map.

Refill modded infinite resources isn't setting resources to the correct value!

Mods can configure their own infinite resources differently from the way the base game handles crude oil. There is nothing that can be done on my end to fix this, but the yield is likely off by a factor of 1,000 or 3,000.

Why are some oil patches getting refilled

If oil patches or other infinite resources are created with the map editor or other mods, they may not be refilled regularly. A simple fix to this is to turn off the mod, load the save, then turn back on the mod and load the save.