I don't see where can I make stone pipes and copper pipes in the game, regardless of normal gameplay or sandboxes.

Make sure Toggle Pipes is checked in the Mod Settings.
Copper pipes are enabled by default.
Plastic pipes require Plastics tech and Stone pipes require Concrete tech.
you can force enable them with the following console commands:
/c game.player.force.recipes["plastic-pipe"].enabled = true; game.player.force.recipes["plastic-pipe-to-ground"].enabled = true
/c game.player.force.recipes["stone-pipe"].enabled = true; game.player.force.recipes["stone-pipe-to-ground"].enabled = true

All pipes should be visible in the logistics tab of the crafting window.

This should be fixed as of now.

stone, iron, and copper pipes should all be unlocked from the start (unless playing with SeaTorio mod which has copper tech.)
plastic pipes and the new concrete pipes are still locked behind their respective technologies.