I've been running into a simular issue. I've got 4 Bulk Rail Loaders in a row;
1 Iron Pipe
2 Iron Gear
3 Steel Plate
4 Solid Fuel
Unit 1, 2 and 4 work perfect but unit 3 (steel plate) refuses to load into the rail cargo wagon.
Strangely enough, I can put Iron Gears, Iron Pipe and Solid fuel into unit 3 and it won't load those either. Plastic Bars do get loaded though.
I suspect the mod 'Larger Stack Size' (https://mods.factorio.com/mod/Larger%20stack%20Size) may have something to do with this, I've got two different versions of the 'Steel-Plate'.