Weirdly enough the reported entities with incorrect collision boxes, do have a collision box set in their data, and ingame with debug option enabled it shows the rectangle. But it does look like this is the issue with somehow getting nil data in More Descriptions.
In the case of my modlist these are the affected entities:
8.115 Script @more-descriptions/data-final-fixes.lua:447: ultrajohn: entity classic-nixie-tube incorrect collision_box
8.115 Script @more-descriptions/data-final-fixes.lua:447: ultrajohn: entity reinforced-nixie-tube incorrect collision_box
8.115 Script @more-descriptions/data-final-fixes.lua:447: ultrajohn: entity small-reinforced-nixie-tube incorrect collision_box
8.119 Script @more-descriptions/data-final-fixes.lua:447: ultrajohn: entity high-temperature-wind incorrect collision_box
8.119 Script @more-descriptions/data-final-fixes.lua:447: ultrajohn: entity fluorine-wind incorrect collision_box
8.119 Script @more-descriptions/data-final-fixes.lua:447: ultrajohn: entity ammonia-wind incorrect collision_box
Anyway, I made a quick fix until the author can update his mod. Get it here:
https://drive.google.com/file/d/1TQfy6RURWlXyo5k0BEPFEpPEfMJUCDio/view?usp=sharing