Hmm.. that makes a lot of sense... but if the other mods haven't caught and fixed the issue, I'm not sure how much help I can be.
With regards to the Belt Reverser functionality, the best I can do is reverse-engineer the solutions that the others have already implemented, since I didn't develop the belt code myself, and I don't have a good grasp of how it works (just enough to patch the holes, as I mentioned)
It's also possible that this issue may not have a simple solution? I can't say that I've ever used that particular configuration for longer belt lines, but I can understand that different people work in different ways. I'll try looking into it when I can, but I can't guarantee a solution.
If possible, I would try to get the Belt Reverser 2.0 dev on this; even though that's their only mod and they haven't updated it in over a year (I would argue that's because there hasn't been any issues in over a year). They seemed to have the best handling of the belt reverser code.