Hi, thanks for reaching out for my personal favorite mod.
The mod currently does not fully support the improved filters for two simple reasons, first one is that the advanced filters are gated that far back (especially with k2 + se) that i didn't really get/need them in my playthroughs, and secondly that checking when to request which filters on which surface would be messy and performance heavy.
if you wish to switch ALL the filter deliveries to the better tier you can edit the file in the mod's script directory, and replace the reference from the standard to the advanced recipe duration (variable already exists, but is simply not used) and changing the delivered item to the advanced one, of course since you'll be modifying the file its tricky if its a multiplayer world.