Hi! Sorry for not responding for over two weeks. I don't remember details, but I must have loaded the game with the mod, the fish did not disappear for at least 15 minutes maybe more, and then I tried removing and re-adding the mod in different saves. Later I found out fish tags are in fact updated, but after a long period.
It would be cool to have a setting for how often they update. You could lower and rise it if needed, or can manually force update pin update after you clear a lake of them. Or at least info on mod page how often will it update pins.
That being said, this mod could be more popular, it's a fun idea.