It is more or less caused by alienbioms. Factorio has a limit of max 255 (floor) tiles when there are more then the limit Factorio will crash. Alienbioms mod has a setting to try to remove unused tiles to stay under this limit. It will start removing important ones if there are to many.
Solution uninstall mods adding tiles or change mod settings to reduce them. For example Dectorio new floors or ores as floor.
