You can also make a quick edit with your own data-final-fixes.lua (I find it handy to have an own mod activated to accommodate all these small fixes in one place, where they can be added or removed easily, without the need to touch the original mod's files):
if data.raw["assembling-machine"]["advanced-assembler"] then
data.raw["assembling-machine"]["advanced-assembler"].fluid_boxes[3] = nil
data.raw["assembling-machine"]["advanced-assembler"].fluid_boxes[4] = nil
end