Any way you could check over and see what the incompat is?

A quick workaround which could solve your problem is that, you could try to disable the 'Basic beacon' in the mod settings, while SE is not enabled, and reenable SE. I will force disable it in a future update, since SE heavily modifies beacon behaviour. Basic modules will not use Krastorio 2 art style (licensing problems, I should edit them to work), but the modules effects seems fine

The new version should solve your problem:
Version: 0.0.3
Date: 2024-05-19
[Space Exploration] compatibility:
- Added minor compatibility to 'Space Exploration'
- Renamed 'Basic beacon' to 'Early beacon' since 'Space Exploration' uses the name already
- 'Early beacon' now uses 10x'Stone bricks' as ingredient
- Transfer effectivity is 0.5 (same as 'Basic beacon')
- Has 4 module slots (half as 'Basic beacon')
- Uses 75Kw of energy ('Basic beacon' is 100Kw)
- 'Basic modules' are properly ordered and grouped up with the rest of the modules
- 'Basic speed module' has 2% pollution increase
- 'Basic effectivity module' has 5% pollution decrease

Please let me know if you find any issues, or if you have any request

Thank you!

As time flies, did you encounter any bugs, or do you have any suggestions with SE compatibility?

No bugs at all! It increases the price for normal modules but that makes sense. I genuinely think you have an amazing mod, here! Thanks so much!