Apologies for the late reply, I had missed that my notifications were off.
I tried as hard as possible to be Cost Neutral while still making sense. It wasn't possible in all cases, but the difference is like 1 stone or plate max, both ways. Yes some chains start off with the initial recipe being cheaper and the end recipe still being more expensive. (Looking at you, Circuit Network things.)
Over all I do feel it balances out, this mod was intended to make the recipes more challenging, not more expensive.