The mod should now support TreeFarm grown trees. However you will need to turn off the "Mark for deconstruction" option in mod settings or it will disable itself when there are no trees in range.
The intent of the mod isn't to set up a self-sustaining tree factory, but to reduce the need for manual deforestation early on before you have construction bots. You can certainly do a tree factory by combining it with TreeFarm or tree-growth however.