Yeah, it will be something to do with either changing mod settings or upgrading. To fix it, run this command (paste it into the console):
/c
for _, force in pairs(game.forces) do
for tech_name, tech in pairs(force.technologies) do
if tech.enabled == false then
if game.technology_prototypes[tech_name].enabled == true then
game.player.print("Enabled tech: [technology="..tech_name.."]")
tech.enabled = true
end
end
end
end