this is known issue caused by omniscience because it moves logistics-2 to green science (originaly it's red), i will look into it most likely on weekend.
I am getting a similar error to this without running Omni-mods. I'm running my same mods from .16 after updating to .17 of course, including full Bob's, Angel's, and Py, and now I get this anytime I have this mod enabled.
Failed to load mods: Difficulty normal: Cycle in technology tree detected.