When using a mod that shrinks the size of the bots, they suddenly become big when they're destroyed. Could this mod check if a bot shrinking mod is installed and automatically scale down the bot being destroyed animation?

I'm curious if they get big if they die for other reasons (biters, enemies, etc) because this mod only flags them for death and the game handles carrying it out

I don't believe so. I've only observed a regular (tiny sized) construction bot ever so slowly past, so I pressed "Kill Lost Bots". It magically got bigger when it died.