wouldn't it be as simple as listing the new quality versions as just another item it can use?
like, instead of saying the gun turret can load yellow ammo and red ammo, now it use yellow ammo Q1, yellow ammo Q2, yellow ammo Q3, yellow ammo Q4, yellow ammo Q5...
it would be a bit tedious to set it up manually, but i don't think there should be much trouble. and there are script that run through the lists for you, so maybe it isn't even that time consuming to set up.