Each factory building needs its own electric network, because you can't connect electric networks on different surfaces. So the only thing I could do about electric network performance being bad when using Factorissimo is to petition the devs to add some way to connect electric networks across surfaces natively, then make Factorissimo use that if/when this becomes implemented.
I have one more suggestion that might help: Check that all your factory buildings are set to transfer enough power for their interiors. I've heard that electric networks are much more optimized for the case that they're fully powered.
Also there's no dedicated Factorissimo thread on the Factorio forums.