There is a setting in bot Delete empty Chunks and Tree Growh Natural Expansion which refers to the distance of chunks.
By default it is 2 in DeC while in TGNE it is 3. Essentially this means that TGNE will try to expand tree chunks outwards but DeC will delete the third chunk. This causes some issues. I would recommend to reduce the distance setting in TGNE accordingly.
Unfortunately I was not able to reproduce this case, however I added a valid check so this should not happen again.
(2.4.1)