I could not check everything (maybe make debug mode list all items not included?)
here are some of the items I found that are not included
catalogs- deepspace 1-4
sciences- astro 1-4, energy 1-4, materials 1-4, bio 1-4, deepspace 1-4
core fragments - iron, copper, coal, beryl, vitimalange, ect. (every core fragment except the base that I tested, I moved on before testing them all)
Interstellar void probe data
My methodology was to start a game with the modpack and use recipe book to see for each item I cared about, what is it an ingredient in. I then check if it is not part of a ducky part, If not report it before moving on.