I added hand crafting back in a while ago, but if you want, you can try the No Hand Crafting mod.
The reason why I removed the logistic drill is because there aren't multiple tiers of it, so if you're playing with Bob's Mining, Alien Loot Economy, Factorio++, 5Dim's, FactorioExtended, etc. and want to upgrade your mining outpost, you'll have to redo the entire thing. I'll allow logistic mining drills to be used early, but I'll leave them out of the mod. If you want to enable them, download the Logistic Mining Drill mod.