When using non-zero position in the settings and then starting a new game the timer shows in the wrong horizontal position. It looks to be around double the given value.
Right clicking on it moves it to the assigned position.
Opening the mod settings in-game and changing it returns it to the proper position once "Resume" is clicked.
Saving the game, while it is the wrong position, and opening the game shows it in the correct position.

The biggest problem is that since I want it over the technology button, above the mini map, it's initial display position is off screen and one of the last two 'tricks' has to be used to get it to show on-screen.

Excellent tool, btw. Thanks.