Hi there. There is a long discussion on this topic on the Foundry Discord which resulted in this mod being made. The problem is multiple mods adding modules that should be white-listed for a selected list of buildings. By default these mods break the feature for each other when applying their logic in final-fixes (as would your proposal). The compat code for that requires each mod to know about all other mods that need special handling. This mod centralizes that so each mod only handles its own behavior. The downside is, that mods not using this logic are forced to use it as well to be compatible.
I can help out if you provide me a specific example (mod combination and building-module-combination) so I know what could be a suitable fix for your case. Or link me the discussion that brought the topic up.
Btw. I'm now releasing a version that excludes recipes from the logic of this mod.