Pls correct me if I'm wrong:
Are you confused by not linked "Kiln smelting" tech as successor for "Stone bricks" tech? Softlock - the tech is shown as available to be researched, but doesn't have really researched prerequisites?
Same + "Wooden loader" is better to have prerequisite "Automation"?
I see. I need to check Graphite & diamond mod separetly, maybe i can add simple change with apm. It seems not be a lot of workaround. Normally electic poles are available from start, but the apm's burner phase move it to reserach. Okay, I'll think how to fix it in more suitable way.
The "Lamp", "Radar", "Fast inserter" can be locked by "Electrcity".
The "Repair pack", "Stone wall" don't really need to be locked by red science pack.
Are these the flaws you had in mind?