ah, then it was not only my imagination ...
just recently (during the last 2 days) i found several mods that appeared to work really slowly with assemblers. having a closer look showed similar bahavior to what Soundra described, or even worse: only inputting one or several new items into an assembler when the output is completely empty. especially on combinations of longer crafting times with large amount of output items this adds quite a bit of waiting when the next item didn't start to be processed while the old output is still slowly being grabbed by inserters.
none of all those mods seemed to use the usual "buffers" on input and output (roughly twice the amount of required items on input as well as twice the capacity in output before the machine stops production)