Just wondering, why did you think it wouldn't alter the game heavily? It's a "big mod" and looks like a maze?
It will change new chunks on maze generation, removing resources, water, etc. But existing chunks will be fine unless regenerated for some reason.
Without modding/console commands the best you can do is landfill the green water that remains after the mod is uninstalled.
I highly recommend taking an offline backup of any save you value. Especially if you are running 0.17 because it is experimental. I do so almost daily.