In order to support AAI Industry the Motor should be hand-craftable as a lot of early game items require these, including the assembler 0.
PyScience has support for AAI Industry in the form of a special Science Pack 0. This one is needed for the first assembler as well.

Adding the following at line 38 of data-updates.lua allows the hand crafting of these items:
-- AAI Industry
["motor"] = true,
-- PyScience
["tcp-t0"] = true,
["sct-t0-cognition-mesh"] = true,
["sct-t0-erudition-turbine"] = true,

Thanks. Added in 0.0.4.

I will have to remember to finish testing before posting my code, PyScience's science pack 0 also requires "stone-tablet","burner-lab" and "burner-assembling-machine" if AAI Industry is installed. For AAI Science Pack 0 suport the following needs to be added:

--AAI Science Pack 0
["science-pack-0"] = true,

Lets hope 0.0.5 fixes all of that ;) (I don't have the time to test these myself).