I've had a few issues that are blocking progress with this mod, so far I've been able to bypass these issues with console commands, but it's not ideal, and I'm a bit worried about the final science pack.

The research that requires you to mine the metal bacteria on Gleba, and the research that needs you to mine lithium ice formations are not possible to complete naturally in this mod. You are also not able to get the pentapod eggs needed for the Biochambers. I have just now also noticed that I cannot put Ammoniacal solution from pumpjacks into pipes, the pumpjacks are pumping but nothing actually enters the pipes (I have not done thorough testing for this, so if this is not reproduceable, it might be mod conflicts or something). The band-aid fix for this has been to use editor commands to actually add some ammonia ocean to Nauvis, and use an offshore pump instead of a pumpjack. I am working towards the end game now, and I'm a bit worried about the promethium asteroid chunks...

The researches I had to complete via console is:
heating-tower
lithium-processing

I had to manually add a few eggs via the console so I could produce my own:
pentapod-egg

and I had to use the map editor (ctrl-shift-f11) to add a patch of:
Ammoniacal Ocean

Not tested yet but might be unavailable:
Promethium asteroid chunks