Py-suite is big awesome addon suite for bob's mods fully based on bobingabout's system - its complicating game but introduces awesome realistic things, can be partially compatible with angel's mods
Py Coal processing - https://mods.factorio.com/mod/pycoalprocessing - were changed only scinece packs №1, №2, №3
Py Fusion Energy was changed only production science pack

If the use of this mod cause problems with science, have you try the "recipe overdrive" mod option in the creation of new game ? This option disable the modifications applied by kaoextended on the science recipes.