These things are locked behind “blue” science - Chemical Science Pack. Is there a reason they are required for Train Stop, Rail Signal, Rail Chain Signal? This prevents ANY use of trains prior to getting that science.
I’m using all three of the Enchanted mods, as well as a few QoL mods, but while I don’t believe that any of the QoL mods should have any impact, I’ll list them anyway : Afraid of the Dark, Bottleneck, CleanTiles, Concreep, Discoscience, FNEI, Mining_Drones, Power Armor MK3, Squeak Through, Turret-Shields, VisionRadar, alien-biomes, aswil, bullet-trails, fireproof-bots, miniloader, op_train_speed. Everything is up to date.