Title. Sorting crushed rubyte creates a version of lead ore that can only be used to create lead plates by alloy smelting it with the normal version of lead ore, and a version of nickle that seemingly can't be used for anything. Maybe an issue with Py touched by an Angel?

Nevermind, found the fix. Credits to user Rohm.

In : PyCoalTBaA_0.9.8\prototypes\angels-mods\overrides\overrides-updates.lua
add the following lines at the end of the document :

fun.global_item_replacer("tin-ore","ore-tin")
fun.global_item_replacer("nickel-ore","ore-nickel")
fun.global_item_replacer("lead-ore","ore-lead")
fun.global_item_replacer("rutile-ore","ore-titanium")
fun.global_item_replacer("bauxite-ore","ore-aluminium")
fun.global_item_replacer("quartz","ore-quartz")
fun.global_item_replacer("zinc-ore","ore-zinc")

Thanks for the tip